An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Detail infomation of NONBNAT000403.1

General info


NONCODE TRANSCRIPT IDNONBNAT000403.1
NONCODE Gene IDNONBNAG000295.1
ChromosomeLK031797
Start Site105470
End Site107118
Strand-
Exon Number2
CNCI Score-0.3946281
Length302
AssemblyAST_PRJEB5043_v1
Other transcript VersionsNone

Sequence


>NONBNAT000403.1
CAGTGATCTATTTTAATTACTGGTCAACATTGAACCCCATGATAAAACTAATGTTTACTTAAAAAACTAAATATAATTTGCATGCATAACATCTTTCAATGGACAAAGGGGTAGTTCCTGAACCTGCCACATCAAGATTCGTTAAAAAGAGTCTACATTTAAATATAGATACGAAAAATTAATGTAAAAGGAACGGTGGGAAGACATGAATCACGCGTCGAAGACACACCTACCCGGAGGGTTAGAGAGGAAACAAAGAGACAAACAAAGAGATGTGAGTTTGGTTTGGTTTTGGGTTTTTAAGGGGTTGGTAGGGTTTGAGGTCCATATGCCTCGATCTTTCTCTTTTTTTTTTTCTTTTAATCTTTATTACAAAATTCGTCTAATTAAATCCACTCCATGATCCATCGAACCATGCATACATAGTAACATATATATATATCTATAGTCCTAGCGAAGTTGTTGGATTCAGTGCAAACACTTGTCAAAGGAGCAGTCCCGATCTGATTCCATCTTATTTTCGTTGTCTATTCGACCTTGGCTTTGGCTTTTACCATCACATATACAACTCTTTAAATAAAAATAGTTTTTAATCTCATATATCTTAGCTCTACGGTCAGAATAGACACCAGATACAAACTTTCGATTCCTCTGGAAGTAACGACGACTCTTAGCATACTTTGTTCTATGTACAAGTTGTGAGAAATACCCATCGTCAGATAATTAGAAACACTATTGACAGGCTTAATTAAACTATCAATAAATACGGTAACTTTTTCACCTCGTGATACACGTAGGTTCTGTATATGCATATACATTATTAACAGTCATGCATATACTTATGGTTTTGCGTATGTGGGGATTTAACAAACATGCTTATAAGCTATATGGAACTCTCTCACGTCAATATGTATATTAATATGCTTTGCATATACACATATCATACACAATAGGTAACCATTTCCCTCAAACCGGATTAGCCAAATTCTTAATTTAACACGAATGTTTCTATATATATTTAGGTCTTTCATGTCATTAGTTTCTATAGACAGTTGTTTCTTCATATCGAATGTAAAACTTTATACAAAACTAAGAAAGAAAATCTCTATCTATATCCGACCATATAAATTTTGTACATATGTTGAGAAAAAATAAGACTTATAAGCATACATACGTTCAATCCGATATATATATTTACTATTGTATGATATATATATATACGCAATACGTCTGTGCCTGTGATAAAGGTATTTATGTTAAACCATAATTAAAAGAAGCTAAACCTCAGAAGCTAAATGTTTATATCGTCATCCAGATCAGTCACAACTCGAAACCATGTAGTAGTTGATGATAAGAAGGATGCATGAATGAAATAATCGATAAGGGTTATAATTTAGGGTTCGAGGACAGATCGAGGCCAAGGTCGAACAGACAACGAAACAAAGATGAGAACAAATAAGATTGCTCACTTTGACAAGCCTAGCATCGAACCCAACCACTTTTGATCATCATCATCTCCGTCTTCTCTTCTGATATCTACCATGTATTTTTTATTTTTTTTAGTCTCAATATTATTCTTAAGAGCTTATAAGAAAAATAGGATATTTTTGTGAAGGAGGACTGAGGAACCCTAGATACTTTATAGAAG

Conservation

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If the retrieved noncode belongs to plant:
qSpecies: Species of query noncode; rSpecies: Species of subject noncode; qTranscript: Query lncRNA;
rTranscript: Subject lncRNA; pIdent: Percentage of identical matches; qCovs: Query coverage per subject;
qStart: Start of alignment in query noncode; qEnd: End of alignment in query noncode;
rStart: Start of alignment in subject noncode; rEnd: End of alignment in subject noncode; Evalue: Expect value


 
pIdent >=   qCovs >=   Evalue <=  
qSpeciesrSpeciesqTranscriptrTranscriptpIdentqCovsqStartqEndrStartrEndEvalue
B.napusB.rapaNONBNAT000403.1NONBRAT004005.193.7210011648172933660.0

Data Sources

Source NameOld Id
refseqrefseq