Detail infomation of NONHSAG108639.1--NONCODE

An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Detail infomation of NONHSAG108639.1

General info

NONCODE GENE ID	NONHSAG108639.1
Chromosome	chr17
Start Site	40699566
End Site	40702288
Strand	+
Length	1199
Assembly	hg38
Class	Linc;
Other Gene Versions	None

Transcripts in Gene

NONCODE TRANSCRIPT ID

NONHSAT237202.1

Expression Profile (Data Source:Human Body Map)

adipose	adrenal	brain	brain_R	breast	colon
0.659161	0.330609	0.670227	0.404673	1.00157	0.609018
foreskin	heart	heart_R	HLF_1	HLF_2	kidney
0.334944	0.450972	0.211532	0.106981	0.499392	0.37972
liver	liver_R	lung	lymphNode	ovary	placenta_R
0.198283	0.0511173	0.350729	1.32722	1.24152	4.69729
prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell
0.489802	0.0770794	0.399569	0.224121	0.601013	0.347233

Expression profile of NONHSAG108639 in Human tissues

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Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine (Squamous Cell Carcinoma Cell Line Exosomes)	BJ_cellLine (Foreskin Fibroblast Cell Line Exosomes)	HepG2_cellLine (Hepatocellular Carcinoma Cell Line Exosomes)	HUVEC_cellLine (Human Umbilical Vein Endothelial Cell Line Exosomes)	invasive_NFPAs (Invasive Non-functional Pituitary Adenomas Exosomes)
0	0	0	0	5.05106
non-invasive_NFPAs (Non-invasive Non-functional Pituitary Adenomas Exosomes)	MCF7_cellLine (Human Breast Cancer Cell Line Exosomes)	MDA-MB-231_cellLine (Human Breast Cancer Cell Line Exosomes)	tuberculosis_patients_serum (Active Tuberculosis Patients Serum Exosomes)	normal_people_blood (Normal People Blood Exosomes)
3.21887	0	0	4.26511	0

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Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : chr17( len:2668 )
      - Gorilla : chr5( len:2672 )^T
      - Orangutan : chr17( len:2667 )
      - Rhesus : N/A
    - Rodents
      - Mouse : N/A
      - Rat : chr10( len:2322 )
    - Laurasiatheria
      - Pig : N/A
      - Cow : N/A
    - Opossum : N/A
    - Platypus : N/A
  - Birds
    - Chicken : N/A
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID

Gene Symbol

Disease name

Source Database

Source PMID

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG108639.1	rs887376	Gene expression of SMARCE1 in peripheral blood monocytes	20502693
NONHSAG108639.1	rs887376	Gene expression of SMARCE1 [probe 211988_at] in lymphoblastoid cell lines	17873877
NONHSAG108639.1	rs887376	Gene expression of probe 236016_at in lymphoblastoid cell lines	17873877
NONHSAG108639.1	rs887376	Gene expression of SMARCE1 [probe 211988_at] in prefrontal cortex	20351726
NONHSAG108639.1	rs874889	Gene expression of SMARCE1 [probe 211988_at] in lymphoblastoid cell lines	17873877
NONHSAG108639.1	rs874889	Gene expression of probe 236016_at in lymphoblastoid cell lines	17873877

Potential Function

GO Number	Description
GO:0014050	negative regulation of glutamate secretion
GO:0007179	transforming growth factor beta receptor signaling pathway
GO:0051384	response to glucocorticoid
GO:0000187	activation of MAPK activity
GO:0007155	cell adhesion
GO:0016485	protein processing
GO:0019827	stem cell maintenance
GO:0010842	retina layer formation
GO:0001300	chronological cell aging
GO:0006366	transcription from RNA polymerase II promoter

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