Detail infomation of NONHSAG079709.1--NONCODE

An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Detail infomation of NONHSAG079709.1

General info

NONCODE GENE ID	NONHSAG079709.1
Chromosome	chr2
Start Site	20404567
End Site	20405740
Strand	.
Length	1173
Assembly	hg38
Class	Linc;
Other Gene Versions	None

Transcripts in Gene

NONCODE TRANSCRIPT ID

NONHSAT186743.1

Expression Profile (Data Source:Human Body Map)

adipose	adrenal	brain	brain_R	breast	colon
0.00892082	0.229547	0	0	0.218257	0
foreskin	heart	heart_R	HLF_1	HLF_2	kidney
0.03441	0	0.162752	0.0549398	0.0932377	1.96752
liver	liver_R	lung	lymphNode	ovary	placenta_R
0.975143	0.0524754	0.127031	1.29934	0.0841197	0.723574
prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell
2.83793	0	0.0836959	0.114946	0.0850083	0

Expression profile of NONHSAG079709 in Human tissues

Loading...

Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine (Squamous Cell Carcinoma Cell Line Exosomes)	BJ_cellLine (Foreskin Fibroblast Cell Line Exosomes)	HepG2_cellLine (Hepatocellular Carcinoma Cell Line Exosomes)	HUVEC_cellLine (Human Umbilical Vein Endothelial Cell Line Exosomes)	invasive_NFPAs (Invasive Non-functional Pituitary Adenomas Exosomes)
0	0.289784	0	0	7.74452
non-invasive_NFPAs (Non-invasive Non-functional Pituitary Adenomas Exosomes)	MCF7_cellLine (Human Breast Cancer Cell Line Exosomes)	MDA-MB-231_cellLine (Human Breast Cancer Cell Line Exosomes)	tuberculosis_patients_serum (Active Tuberculosis Patients Serum Exosomes)	normal_people_blood (Normal People Blood Exosomes)
5.25209	0	0	6.33753	0

Loading...

Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : chr2A( len:1173 )
      - Gorilla : chr2A( len:1165 )
      - Orangutan : chr2a( len:1171 )
      - Rhesus : chr13( len:1179 )
    - Rodents
      - Mouse : N/A
      - Rat : N/A
    - Laurasiatheria
      - Pig : N/A
      - Cow : N/A
    - Opossum : N/A
    - Platypus : N/A
  - Birds
    - Chicken : N/A
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID

Gene Symbol

Disease name

Source Database

Source PMID

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG079709.1	rs16987610	Gene expression of EFHB in peripheral blood monocytes	20502693
NONHSAG079709.1	rs16987610	Gene expression of DDX47 in peripheral blood monocytes	20502693
NONHSAG079709.1	rs16987610	Gene expression of VDAC3 in peripheral blood monocytes	20502693
NONHSAG079709.1	rs16987610	Mean bilateral hippocampal volume (excluding patients with neuropsychiatric disorders)	22504417
NONHSAG079709.1	rs16987610	Alzheimer's disease	17998437
NONHSAG079709.1	rs343141	Gene expression of SCRN2 in peripheral blood monocytes	20502693
NONHSAG079709.1	rs343141	Serum ratio of (1-linoleoylglycerophosphocholine)/(1-stearoylglycerophosphocholine)	21886157
NONHSAG079709.1	rs343141	Serum ratio of (1-linoleoylglycerol (1-monolinolein))/(lathosterol)	21886157

Potential Function

GO Number	Description
GO:0016485	protein processing
GO:2000251	positive regulation of actin cytoskeleton reorganization
GO:0050691	regulation of defense response to virus by host
GO:0050792	regulation of viral process
GO:0055114	oxidation-reduction process
GO:0034097	response to cytokine
GO:0017144	drug metabolic process
GO:0052697	xenobiotic glucuronidation
GO:2001030	negative regulation of cellular glucuronidation
GO:0048672	positive regulation of collateral sprouting

NONCODE

Introduce of NONCODE

Browse NONCODE

Search a gene/transcript

Statistics

Blast

Genome

ID Conversion

Download

Bio-tools

ncFANs

CNCI

lnc-GFP

lncRNA Analysis pipeline