Detail infomation of NONHSAG042535.3--NONCODE

An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Detail infomation of NONHSAG042535.3

General info

NONCODE GENE ID	NONHSAG042535.3
Chromosome	chr6
Start Site	708463
End Site	711405
Strand	-
Length	2942
Assembly	hg38
Class	Linc;
Other Gene Versions	NONHSAG042535.2(old version)

Transcripts in Gene

NONCODE TRANSCRIPT ID

NONHSAT251815.1

NONHSAT106081.2

Expression Profile (Data Source:Human Body Map)

adipose	adrenal	brain	brain_R	breast	colon
0.400147	0.441409	0.216156	0.0440949	0.213607	2.90038
foreskin	heart	heart_R	HLF_1	HLF_2	kidney
0.144383	0.0369208	0	0.0772895	0.0659452	0.167351
liver	liver_R	lung	lymphNode	ovary	placenta_R
0.0546486	0	0.85456	0.278368	0.655949	0.55341
prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell
1.77674	0.198554	0.582802	0.0696122	0.243596	0.891308

Expression profile of NONHSAG042535 in Human tissues

Loading...

Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine (Squamous Cell Carcinoma Cell Line Exosomes)	BJ_cellLine (Foreskin Fibroblast Cell Line Exosomes)	HepG2_cellLine (Hepatocellular Carcinoma Cell Line Exosomes)	HUVEC_cellLine (Human Umbilical Vein Endothelial Cell Line Exosomes)	invasive_NFPAs (Invasive Non-functional Pituitary Adenomas Exosomes)
0	2.32568	1.95937	0.800635	5.42497
non-invasive_NFPAs (Non-invasive Non-functional Pituitary Adenomas Exosomes)	MCF7_cellLine (Human Breast Cancer Cell Line Exosomes)	MDA-MB-231_cellLine (Human Breast Cancer Cell Line Exosomes)	tuberculosis_patients_serum (Active Tuberculosis Patients Serum Exosomes)	normal_people_blood (Normal People Blood Exosomes)
7.33597	0	0	3.15821	0.611351

Loading...

Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : chr6( len:2950 )
      - Gorilla : chr6( len:2937 )
      - Orangutan : chr6( len:2945 )
      - Rhesus : chr4( len:2944 )^T
    - Rodents
      - Mouse : chr13( len:2689 )^T
      - Rat : chr17( len:2710 )
    - Laurasiatheria
      - Pig : chr7( len:2751 )
      - Cow : N/A
    - Opossum : N/A
    - Platypus : N/A
  - Birds
    - Chicken : N/A
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID

Gene Symbol

Disease name

Source Database

Source PMID

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG042535.3	rs2804736	Gene expression of EXOC2 in liver	18462017
NONHSAG042535.3	rs2244443	Gene expression of probe 1559287_at in lymphoblastoid cell lines	17873877

Potential Function

GO Number	Description
GO:0007249	I-kappaB kinase/NF-kappaB signaling
GO:0010468	regulation of gene expression
GO:0007606	sensory perception of chemical stimulus
GO:0007171	activation of transmembrane receptor protein tyrosine kinase activity
GO:0051384	response to glucocorticoid
GO:0016485	protein processing
GO:0045987	positive regulation of smooth muscle contraction
GO:0010579	positive regulation of adenylate cyclase activity involved in G-protein coupled receptor signaling pathway
GO:0007207	phospholipase C-activating G-protein coupled acetylcholine receptor signaling pathway
GO:0007213	G-protein coupled acetylcholine receptor signaling pathway

NONCODE

Introduce of NONCODE

Browse NONCODE

Search a gene/transcript

Statistics

Blast

Genome

ID Conversion

Download

Bio-tools

ncFANs

CNCI

lnc-GFP

lncRNA Analysis pipeline