Detail infomation of NONHSAG026122.3--NONCODE

An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Detail infomation of NONHSAG026122.3

General info

NONCODE GENE ID	NONHSAG026122.3
Chromosome	chr19
Start Site	47484268
End Site	47504661
Strand	+
Length	13743
Assembly	hg38
Class	Linc;
Other Gene Versions	NONHSAG026122.2(old version)

Transcripts in Gene

NONCODE TRANSCRIPT ID

NONHSAT239454.1

NONHSAT239455.1

NONHSAT066970.2

NONHSAT066971.2

NONHSAT066972.2

NONHSAT066973.2

Expression Profile (Data Source:Human Body Map)

adipose	adrenal	brain	brain_R	breast	colon
1.05243	0.698988	0.835816	0.548709	0.848074	0.756681
foreskin	heart	heart_R	HLF_1	HLF_2	kidney
0.827826	1.10629	0.297254	0.381902	0.685473	0.686042
liver	liver_R	lung	lymphNode	ovary	placenta_R
1.04001	0.109917	0.488383	0.75894	0.873841	0.387327
prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell
0.636902	0.77426	2.62753	3.2346	1.28224	0.411221

Expression profile of NONHSAG026122 in Human tissues

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Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine (Squamous Cell Carcinoma Cell Line Exosomes)	BJ_cellLine (Foreskin Fibroblast Cell Line Exosomes)	HepG2_cellLine (Hepatocellular Carcinoma Cell Line Exosomes)	HUVEC_cellLine (Human Umbilical Vein Endothelial Cell Line Exosomes)	invasive_NFPAs (Invasive Non-functional Pituitary Adenomas Exosomes)
9.00529	15.4173	6.41956	16.1242	7.50892
non-invasive_NFPAs (Non-invasive Non-functional Pituitary Adenomas Exosomes)	MCF7_cellLine (Human Breast Cancer Cell Line Exosomes)	MDA-MB-231_cellLine (Human Breast Cancer Cell Line Exosomes)	tuberculosis_patients_serum (Active Tuberculosis Patients Serum Exosomes)	normal_people_blood (Normal People Blood Exosomes)
9.18206	0	0	6.89494	14.0035

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Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : chr19( len:20537 )^T
      - Gorilla : chr19( len:20128 )
      - Orangutan : N/A
      - Rhesus : chr19( len:20333 )
    - Rodents
      - Mouse : N/A
      - Rat : N/A
    - Laurasiatheria
      - Pig : N/A
      - Cow : N/A
    - Opossum : N/A
    - Platypus : N/A
  - Birds
    - Chicken : N/A
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID

Gene Symbol

Disease name

Source Database

Source PMID

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG026122.3	rs12460436	HDL cholesterol	20686565
NONHSAG026122.3	rs830150	HDL cholesterol	20686565
NONHSAG026122.3	rs830150	Alzheimer's disease	24755620
NONHSAG026122.3	rs12460373	Gene expression of GLTSCR1 in blood	21829388
NONHSAG026122.3	rs12460373	Differential exon level expression of ENST00000314121 [probe 3866657] in brain cortex	19222302
NONHSAG026122.3	rs12460373	Gene expression of [probe 1300369 centered at chr19:52470716] in blood	21829388
NONHSAG026122.3	rs12460373	HDL cholesterol	20686565
NONHSAG026122.3	rs2242495	HDL cholesterol	20686565
NONHSAG026122.3	rs8106455	HDL cholesterol	20686565
NONHSAG026122.3	rs830146	HDL cholesterol	20686565

Potential Function

GO Number	Description
GO:0007155	cell adhesion
GO:0006366	transcription from RNA polymerase II promoter
GO:0007409	axonogenesis
GO:0007286	spermatid development
GO:0042997	negative regulation of Golgi to plasma membrane protein transport
GO:0051384	response to glucocorticoid
GO:0016485	protein processing
GO:0007205	protein kinase C-activating G-protein coupled receptor signaling pathway
GO:0045918	negative regulation of cytolysis
GO:0000187	activation of MAPK activity

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