Detail infomation of NONHSAG022680.2--NONCODE

An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Detail infomation of NONHSAG022680.2

General info

NONCODE GENE ID	NONHSAG022680.2
Chromosome	chr17
Start Site	73733186
End Site	73748609
Strand	-
Length	6442
Assembly	hg38
Class	Linc;
Other Gene Versions	NONHSAG022680.1(old version)

Transcripts in Gene

NONCODE TRANSCRIPT ID

NONHSAT055738.2

Expression Profile (Data Source:Human Body Map)

adipose	adrenal	brain	brain_R	breast	colon
0.54682	0.532638	0.889705	0.0717599	0.721695	0.940445
foreskin	heart	heart_R	HLF_1	HLF_2	kidney
0.0473553	0.135102	0.252115	0	0.00241151	0.273774
liver	liver_R	lung	lymphNode	ovary	placenta_R
0.0160487	0	0.210234	0.341565	0.341196	2.4209
prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell
0.761905	0.0287513	0.254306	0.117068	0.200563	0.00431159

Expression profile of NONHSAG022680 in Human tissues

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Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine (Squamous Cell Carcinoma Cell Line Exosomes)	BJ_cellLine (Foreskin Fibroblast Cell Line Exosomes)	HepG2_cellLine (Hepatocellular Carcinoma Cell Line Exosomes)	HUVEC_cellLine (Human Umbilical Vein Endothelial Cell Line Exosomes)	invasive_NFPAs (Invasive Non-functional Pituitary Adenomas Exosomes)
0	0	4.90315	0	12.2958
non-invasive_NFPAs (Non-invasive Non-functional Pituitary Adenomas Exosomes)	MCF7_cellLine (Human Breast Cancer Cell Line Exosomes)	MDA-MB-231_cellLine (Human Breast Cancer Cell Line Exosomes)	tuberculosis_patients_serum (Active Tuberculosis Patients Serum Exosomes)	normal_people_blood (Normal People Blood Exosomes)
11.1287	0	0	9.58731	0

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Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : chr17( len:15012 )
      - Gorilla : chr5( len:15309 )
      - Orangutan : chr17( len:16446 )
      - Rhesus : chr16( len:15530 )
    - Rodents
      - Mouse : N/A
      - Rat : N/A
    - Laurasiatheria
      - Pig : chr12( len:9645 )^T
      - Cow : N/A
    - Opossum : N/A
    - Platypus : N/A
  - Birds
    - Chicken : N/A
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID

Gene Symbol

Disease name

Source Database

Source PMID

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG022680.2	rs12602529	Femoral neck bone mineral density (BMD)	19874204
NONHSAG022680.2	rs899596	Tourette's syndrome	22889924
NONHSAG022680.2	rs899596	Tourette syndrome	22889924
NONHSAG022680.2	rs9909176	Femoral neck bone mineral density (BMD)	19874204
NONHSAG022680.2	rs9909176	Type 2 diabetes	17554300
NONHSAG022680.2	rs9909176	Multiple complex diseases	17554300
NONHSAG022680.2	rs9903519	Femoral neck bone mineral density (BMD)	19874204
NONHSAG022680.2	rs1552013	Femoral neck bone mineral density (BMD)	19874204
NONHSAG022680.2	rs1552013	Type 2 diabetes	17554300
NONHSAG022680.2	rs1552013	Multiple complex diseases	17554300

Potential Function

GO Number	Description
GO:0016485	protein processing
GO:0014002	astrocyte development
GO:1901751	leukotriene A4 metabolic process
GO:0071786	endoplasmic reticulum tubular network organization
GO:0030048	actin filament-based movement
GO:0031344	regulation of cell projection organization
GO:0042462	eye photoreceptor cell development
GO:0038184	cell surface bile acid receptor signaling pathway
GO:0061024	membrane organization
GO:0051693	actin filament capping

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