Detail infomation of NONHSAG020193.2--NONCODE

An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Detail infomation of NONHSAG020193.2

General info

NONCODE GENE ID	NONHSAG020193.2
Chromosome	chr16
Start Site	85689325
End Site	85699691
Strand	-
Length	1507
Assembly	hg38
Class	Linc;
Other Gene Versions	NONHSAG020193.1(old version)

Transcripts in Gene

NONCODE TRANSCRIPT ID

NONHSAT144138.2

Expression Profile (Data Source:Human Body Map)

adipose	adrenal	brain	brain_R	breast	colon
1.75569	0.484897	0.257246	0.0617915	1.50743	0.52609
foreskin	heart	heart_R	HLF_1	HLF_2	kidney
0.789478	0.472462	0.488678	0.407555	0.462114	0.456176
liver	liver_R	lung	lymphNode	ovary	placenta_R
0.266069	0.0782454	0.75501	0.33498	1.03969	5.19631
prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell
0.36446	1.00527	0.887367	1.69868	1.30471	0.496271

Expression profile of NONHSAG020193 in Human tissues

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Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine (Squamous Cell Carcinoma Cell Line Exosomes)	BJ_cellLine (Foreskin Fibroblast Cell Line Exosomes)	HepG2_cellLine (Hepatocellular Carcinoma Cell Line Exosomes)	HUVEC_cellLine (Human Umbilical Vein Endothelial Cell Line Exosomes)	invasive_NFPAs (Invasive Non-functional Pituitary Adenomas Exosomes)
0	0.192075	3.82513	2.66842	14.4773
non-invasive_NFPAs (Non-invasive Non-functional Pituitary Adenomas Exosomes)	MCF7_cellLine (Human Breast Cancer Cell Line Exosomes)	MDA-MB-231_cellLine (Human Breast Cancer Cell Line Exosomes)	tuberculosis_patients_serum (Active Tuberculosis Patients Serum Exosomes)	normal_people_blood (Normal People Blood Exosomes)
10.4119	0	0	6.15309	0

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Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : chr16( len:9888 )
      - Gorilla : chr16( len:10230 )
      - Orangutan : N/A
      - Rhesus : chr20( len:9662 )
    - Rodents
      - Mouse : N/A
      - Rat : N/A
    - Laurasiatheria
      - Pig : N/A
      - Cow : N/A
    - Opossum : N/A
    - Platypus : N/A
  - Birds
    - Chicken : N/A
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID

Gene Symbol

Disease name

Source Database

Source PMID

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG020193.2	rs1868871	Gene expression of GINS2 in peripheral blood monocytes	20502693
NONHSAG020193.2	rs1868871	Gene expression of ARHGAP9 (probeID ILMN_1663916) in breast tumors	22522925
NONHSAG020193.2	rs1868871	Transmission distortion	22377632
NONHSAG020193.2	rs380996	Gene expression of GINS2 in peripheral blood monocytes	20502693
NONHSAG020193.2	rs421043	Gene expression of ACTL8 in peripheral blood monocytes	20502693
NONHSAG020193.2	rs386282	Gene expression of PCDHGA10 in peripheral blood monocytes	20502693
NONHSAG020193.2	rs2489	Gene expression of GINS2 in blood	21829388
NONHSAG020193.2	rs2489	Gene expression of AC123908.3 in blood	21829388

Potential Function

GO Number	Description
GO:0016485	protein processing
GO:0014050	negative regulation of glutamate secretion
GO:0009235	cobalamin metabolic process
GO:0051384	response to glucocorticoid
GO:0007179	transforming growth factor beta receptor signaling pathway
GO:0030949	positive regulation of vascular endothelial growth factor receptor signaling pathway
GO:0000187	activation of MAPK activity
GO:0019827	stem cell maintenance
GO:0007155	cell adhesion
GO:0006366	transcription from RNA polymerase II promoter

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