Detail infomation of NONHSAG001989.2--NONCODE

An integrated knowledge database dedicated to ncRNAs, especially lncRNAs.

Detail infomation of NONHSAG001989.2

General info

NONCODE GENE ID	NONHSAG001989.2
Chromosome	chr1
Start Site	87044934
End Site	87045871
Strand	-
Length	937
Assembly	hg38
Class	Antisense;
Other Gene Versions	NONHSAG001989.1(old version)

Transcripts in Gene

NONCODE TRANSCRIPT ID

NONHSAT004280.2

Expression Profile (Data Source:Human Body Map)

adipose	adrenal	brain	brain_R	breast	colon
0	0	1.42444	0.769271	0.153198	0.199398
foreskin	heart	heart_R	HLF_1	HLF_2	kidney
0	0	0	0	0	0.0230095
liver	liver_R	lung	lymphNode	ovary	placenta_R
0	0	0.11112	0	0	0
prostate	skeltalMuscle	testes	testes_R	thyroid	whiteBloodCell
3.10609	0	0.1945	0.100006	0	0

Expression profile of NONHSAG001989 in Human tissues

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Exosome Expression Profile (Data Source: NCBI GEO)

A431_cellLine (Squamous Cell Carcinoma Cell Line Exosomes)	BJ_cellLine (Foreskin Fibroblast Cell Line Exosomes)	HepG2_cellLine (Hepatocellular Carcinoma Cell Line Exosomes)	HUVEC_cellLine (Human Umbilical Vein Endothelial Cell Line Exosomes)	invasive_NFPAs (Invasive Non-functional Pituitary Adenomas Exosomes)
0	4.91014	0	2.66106	6.68824
non-invasive_NFPAs (Non-invasive Non-functional Pituitary Adenomas Exosomes)	MCF7_cellLine (Human Breast Cancer Cell Line Exosomes)	MDA-MB-231_cellLine (Human Breast Cancer Cell Line Exosomes)	tuberculosis_patients_serum (Active Tuberculosis Patients Serum Exosomes)	normal_people_blood (Normal People Blood Exosomes)
6.0263	0	0	3.96087	4.59105

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Conservation Info

Chordata
- Vertebrates
  - Manmals
    - Primates
      - Human
      - Chimp : chr1( len:939 )
      - Gorilla : N/A
      - Orangutan : chr1( len:939 )
      - Rhesus : chr1( len:938 )
    - Rodents
      - Mouse : N/A
      - Rat : chr13( len:940 )
    - Laurasiatheria
      - Pig : chr7( len:932 )
      - Cow : chr18( len:12857 )
    - Opossum : chr1( len:9736 )
    - Platypus : Ultra517( len:7138 )
  - Birds
    - Chicken : chr11( len:5672 )
- Actinopteryqii
  - Zebrafish : N/A

Note: T = There are transcripts in this region.

Disease related

Disease:

NONCODE ID

Gene Symbol

Disease name

Source Database

Source PMID

Mutations:

NONCODE ID	SNP ID	GWAS trait	Source PMID
NONHSAG001989.2	rs7534656	Gene expression of SEP15 in normal prepouch ileum	23474282
NONHSAG001989.2	rs7534656	Gene expression of 40801 in peripheral blood monocytes	20502693
NONHSAG001989.2	rs7534656	Serum concentration of 5-oxoproline	21886157

Potential Function

GO Number	Description
GO:1901652	response to peptide
GO:0016485	protein processing
GO:1902476	chloride transmembrane transport
GO:0006821	chloride transport
GO:0000122	negative regulation of transcription from RNA polymerase II promoter
GO:0006936	muscle contraction
GO:0007249	I-kappaB kinase/NF-kappaB signaling
GO:0060009	Sertoli cell development
GO:0051384	response to glucocorticoid
GO:0007200	phospholipase C-activating G-protein coupled receptor signaling pathway

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